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Supported Applications

SPIDER

  • Description

    (System for Processing Image Data from Electron microscopy and Related fields) a large image processing suite for electron microscopy.

  • Usage Notes

    Start the vncserver & vncviewer

    vncserver :5 -cc 3 -depth 8 -localhost -geometry 1252x934
    vncviewer :5

    When the viewer window closes, the vncserver will be killed


    vncserver -kill :5
    To reset the password remove the .vnc directory from your HOME directory.

    The OSX build is a test build of the port. If there are any problems please let us know so that we can correct them immediately.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install spider Copy to clipboard

  • Primary Citation*

    T. Shaikh, H. Gao, W. Baxter, F. Asturias, N. Boisset, A. Leith, and J. Frank. 2008. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc. 3: 1941-1974.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  26.06
    OS X INTEL:  22.09

  • Other Versions

      Linux 64:

      8.03, 8.02, 24.01, 23.03, 22.10, 21.11, 20.12, 19.04, 18.15, 17.05, 15.06, 13.0

    • OS X INTEL:

      21.11, 20.12, 19.04, 18.15, 16.04, 15.10, 14.18, 13.0

  • Developers

    ArDean Leith, Joachim Frank

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