Supported Applications

RNA Framework

Description

a modular toolkit developed to deal with RNA structure probing and post-transcriptional modifications mapping high-throughput data. Toolkit will help with automatic reference transcriptome creation, automatic reads preprocessing (adapter clipping and trimming) and mapping, scoring and data normalization, and accurate RNA folding prediction by incorporating structural probing data.
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install rna-framework
Primary Citation*

D. Incarnato, F. Neri, F. Anselmi, and S. Oliviero. 2016. RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data. Bioinformatics. 32(3): 459-461.
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