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ProDy

  • Description

    a protein structural dynamics analysis software package.

    ProDy is installed as a module within python.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install prody Copy to clipboard

  • Primary Citation*

    A. Bakan, L. M. Meireles, and I. Bahar. 2011. ProDy: Protein Dynamics Inferred from Theory and Experiments. Bioinformatics. 27(11): 1575-1577.

    S. Zhang, J. M. Krieger, Y. Zhang, C. Kaya, B. Kaynak, K. Mikulska-Ruminska, P. Doruker, H. Li, and I. Bahar. 2021. ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python. Bioinformatics. 37(20): 3657-3659.


    • *Full citation information available through

  • Webinars

    Topic: Elastic Network Models and ProDy for Bimolecular Systems Dynamics
    Presenter: Ivet Bahar, University of Pittsburgh

    Host: Jason Key
    Recorded on June 26, 2016

  • Keywords

    Computational Chemistry, Python Module

  • Default Versions

    Linux 64:  2.3.1
    OS X INTEL:  2.3.1

  • Other Versions

      Linux 64:

      2.0.2, 1.9.4, 1.8.2, 1.11, 1.10.7

    • OS X INTEL:

      2.0.2, 1.9.4, 1.8.2, 1.11, 1.10.7

  • Developers

    Chakra Chennubhotla, Ivet Bahar

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