Supported Applications
MAFFT
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Description
a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <200 sequences), FFT-NS-2 (fast; for alignment of <30,000 sequences).
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install mafft
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Primary Citation*
K. Katoh, K. Misawa, K. Kuma, and T. Miyata. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14): 3059-3066.
(Note: describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies)-
*Full citation information available through
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Citation Note
A full list of citations can also be found on the MAFFT website. -
Webinars
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Keywords
Multiple Structure Alignment, Protein Structure Analysis, Proteomics
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Default Versions
Linux 64:  7.475
OS X INTEL:  7.475 -
Other Versions
Linux 64:
7.471, 7.453, 7.429, 7.394 -
OS X INTEL:
7.471, 7.453, 7.429, 7.394
Developers
Katoh Kazutaka