Supported Applications


  • Description

    (Dynamics Extraction From cryo-em Map) provides an implementation of a dynamics prediction from a cryo-EM density map.

  • Usage Notes

    Google Colaboratory version of DEFMap is also available. https://colab.research.google.com/gist/sishida21/a75503ad30aa6f11f99e7d2af8467727/colabdefmap-ipynb.ipynb#scrollTo=hcZeBpivZOJH

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install defmap Copy to clipboard
  • Primary Citation*

    S. Matsumoto, S. Ishida, M. Araki, T. Kato, K. Terayama, and Y. Okuno. 2021. Extraction of protein dynamics information from cryo-EM maps using deep learning. Nature Machine Intelligence. 3: 153-160.

    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  1.0.1

  • Other Versions

      Linux 64:

      1.0.1-gpu, 1.0.1-cpu
  • Developers

    Shigeyuki Matsumoto, Shoichi Ishida