Supported Applications
breseq
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Description
a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. It reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads.
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Primary Citation*
D. E. Deatherage and J. E. Barrick. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. Springer New York. 1151: 165-188.
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*Full citation information available through
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Default Versions
Linux 64: 0.32.0
OS X INTEL: 0.32.0 -
Other Available Versions
Linux 64:
1.00rc8, 0.30.0, 0.29.0, 0.27.1 -
OS X INTEL:
1.00rc8, 0.30.0, 0.27.1