Supported Applications
breseq
-
Description
a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. It reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads.
-
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install breseq
-
Primary Citation*
D. E. Deatherage and J. E. Barrick. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. Springer New York. 1151: 165-188.
-
*Full citation information available through
-
-
Keywords
-
Default Versions
Linux 64:  0.32.0
OS X INTEL:  0.32.0 -
Other Versions
Linux 64:
1.00rc8, 0.30.0, 0.29.0, 0.27.1 -
OS X INTEL:
1.00rc8, 0.30.0, 0.27.1
Developers
Daniel Deatherage, Dave Knoester, Jeffrey Barrick