Supported Applications

breseq

Description

a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. It reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads.
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install breseq
Primary Citation*

D. E. Deatherage and J. E. Barrick. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. Springer New York. 1151: 165-188.
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