Supported Applications


  • Description

    a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. It reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install breseq Copy to clipboard
  • Primary Citation*

    D. E. Deatherage and J. E. Barrick. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. Springer New York. 1151: 165-188.

    • *Full citation information available through

  • Keywords

    High-throughput sequencing, WGS Analysis

  • Default Versions

    Linux 64:  0.32.0
    OS X INTEL:  0.32.0

  • Other Versions

      Linux 64:

      1.00rc8, 0.30.0, 0.29.0, 0.27.1
    • OS X INTEL:

      1.00rc8, 0.30.0, 0.27.1
  • Developers

    Daniel Deatherage, Dave Knoester, Jeffrey Barrick