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Bowtie 2

  • Description

    an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install bowtie-2 Copy to clipboard

  • Primary Citation*

    B. L. &. S. L. Salzberg. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods. Nature Publishing Group, a division of Macmillan Publishers Limited. 9(4): 357-359.


    • *Full citation information available through

  • Keywords

    DNA-Sequencing, RNA-Sequencing

  • Default Versions

    Linux 64:  2.3.5.1
    OS X INTEL:  2.3.5.1

  • Other Versions

      Linux 64:

      2.3.2, 2.2.9, 2.2.8, 2.2.7

    • OS X INTEL:

      2.3.2, 2.2.9, 2.2.8, 2.2.7
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