Supported Applications
bedtools
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Description
a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic. Bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF, VCF. While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install bedtools
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Primary Citation*
A. R. Quinlan and I. M. Hall. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 26(6): 841-842.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  2.29.0
OS X INTEL:  2.29.0 -
Other Versions
Linux 64:
2.26.0 -
OS X INTEL:
2.26.0
Developers
Aaron R Quinlan